The 14 Best eCommerce Inventory Management Software in 2025

A decade ago, inventory management in eCommerce was often little more than spreadsheets. Businesses tracked stock manually, synced orders at the end of the day, and hoped overselling wouldn’t upset customers. The problem was that this approach left little room for accuracy or agility: One missed entry could also mean stockouts. 

Fast forward to 2025. Inventory systems are now the backbone of online retail, powering real-time updates and faster delivery promises. The global e-commerce Inventory Management Software Market is projected to grow from USD 16.15 billion in 2025 to USD 33.78 billion by 2034

In fact, businesses using automation reduce stockouts by 30% and elevate operational efficiency by up to 50% through real-time inventory tracking and minimization of human error. But the real question for sellers is this: which software is actually worth using? In this article, we’ll dive deep into the 14 best eCommerce inventory management tools in 2025

What is eCommerce Inventory Management Software?

In simple terms, eCommerce inventory management software is a system that helps online sellers manage their products. Instead of juggling spreadsheets or guessing how much stock you have left, it shows you exactly what’s available, where it is, and when it needs to be reordered.

Let’s say you sell sneakers on Shopify, Amazon, and eBay. Without proper software, you might sell the same pair twice because the platforms don’t update fast enough. With inventory management software, as soon as a product sells on Amazon, your stock levels on Shopify and eBay are updated automatically.

Key Features to Look For in eCommerce Inventory Management Software

Every business is different. For instance, you might be selling on multiple platforms, struggling with stockouts, or simply tired of updating spreadsheets. Whatever your situation, the right software should fit your needs. Here are the key features you’ll want to look for:

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Inventory management applications that are AI-driven can deliver where traditional inventory management falls short, by providing real-time insights backed by big data, these applications enable retailers to respond to market changes through predictive forecasts that reduce waste, improve operational efficiency, and enhance customer satisfaction.

Donnafay MacDonald

Research Director at Info-Tech Research Group

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Best 14 eCommerce Inventory Management Software to Look for in 2025 

With so many options out there, not every inventory tool makes the cut. For this list, we’ve selected the 14 best eCommerce inventory management software in 2025 based on their reliability, multichannel support, ease of use, scalability, and real-world value for businesses of different sizes.

1. Sortly – Best for Small Businesses

Sortly is built to take the headache out of inventory tracking for small teams. Instead of juggling spreadsheets, you can organize and automate your stock at the touch of a button, whether it’s supplies, tools, or finished products. 

Over 15,000 businesses trust Sortly to keep their inventory running smoothly, and with good reason. Its mobile-first design lets you scan barcodes, upload photos, and update stock levels from anywhere, even offline, with automatic syncing across devices once you’re back online. 

For small businesses that need clarity and speed without IT complexity, Sortly delivers a streamlined solution.

Specifics	Details
Features	Visual cataloging with item photos to make stock tracking intuitive. Barcode & QR code scanning via mobile app for quick updates. Multi-location tracking with folders and tags for better organization. Low-stock alerts to prevent shortages before they happen. Real-time syncing across all devices even when offline.
Highlights	Designed specifically for small businesses without dedicated inventory managers. Easy to set up – no steep learning curve or IT expertise required. Affordable pricing makes it accessible for startups and growing teams.

2. Zoho Inventory – Affordable, Multi-Channel Integration

Zoho Inventory is a cost-effective solution designed for businesses that want smooth inventory control while selling across multiple channels. It helps you connect with platforms like Amazon, eBay, Etsy, and Shopify, so you can sync stock levels and orders automatically. 

As Zoho says, it “streamlines your order and inventory management” with real-time updates. With over 70 million users across the Zoho ecosystem, it’s a trusted choice for small to mid-sized businesses that need enterprise-level tools without the hefty price tag.

Specifics	Details
Features	Multi-channel integration with Amazon, eBay, Shopify, and more for seamless selling. Real-time inventory tracking to avoid overselling. Automated order management with invoicing, shipping, and returns. Mobile app support for on-the-go updates. Integration with other Zoho apps (Books, CRM, Analytics) for unified workflows.
Highlights	Affordable pricing plans starting with a free tier for small businesses. Scales easily as your sales channels grow. Designed for businesses that want enterprise-like functionality at SMB budgets.

3. Netstock – Advanced Forecasting for Wholesale

Netstock is built for wholesalers and distributors who manage complex supply chains and large product catalogs. Instead of simply tracking what’s in stock, it helps businesses predict future demand, optimize replenishment cycles, and identify where money is tied up in excess inventory. 

The platform offers supplier performance insights, ensuring lead times are accurate and reliable. Businesses using Netstock achieve up to a 25% reduction in excess inventory and a 15% boost in fill rates, which directly improves cash flow and customer satisfaction. With integrations into leading ERPs, it’s a practical solution for companies dealing with thousands of SKUs across multiple warehouses.

Specifics	Details
Features	Demand forecasting powered by AI-driven models. Replenishment recommendations to optimize stock levels. Supplier performance tracking with lead time management. Multi-warehouse visibility for better control. ERP integrations with NetSuite, Sage, Microsoft Dynamics.
Highlights	Built for wholesalers and distributors. Fully operational in 90 days or less. Scales easily to handle thousands of SKUs.

4. Odoo – Highly Customizable, Open-Source

Odoo Inventory is part of a fully open-source ERP platform designed to adapt to how you run your business. Instead of forcing rigid workflows, it lets you customize operations like stock routing, packaging, and reservation strategies. Businesses can manage multi-warehouse operations, track lots and serials, and keep a close eye on KPIs from a central dashboard. With its modular approach, you can add apps like Accounting, CRM, or eCommerce whenever you need, creating a system that scales with you.

Specifics	Details
Features	Real-time inventory across warehouses and locations. Serial, lot, and packaging tracking. Cycle counting and reservation rules. Insightful KPI dashboard and operational tracking.
Highlights	Fully open-source and customizable. Supports complex warehouse strategies. Integrates seamlessly with CRM, eCommerce, and accounting modules.

5. Finale Inventory – High-Volume Sellers

Finale Inventory is built for businesses dealing with high order volumes and multiple sales channels. It eliminates the need for manual spreadsheets by offering centralized, cloud-based control. Users can track stock at the bin level across warehouses, set up automated restocking alerts, and generate purchase orders instantly when inventory runs low. With tight integration into marketplaces like Amazon FBA, Finale helps sellers prevent overselling and streamline fulfillment. Its scalability makes it a reliable tool for fast-growing businesses that can’t afford delays or errors.

Specifics	Details
Features	Bin-level tracking across warehouses. Continuous sync with Amazon FBA and other channels. Automated low-stock alerts and purchase-order generation. Centralized inventory visibility on any device.
Highlights	Prevents overselling with persistent sync. Gives you real-time visibility everywhere. Built for rapid, scalable operations without spreadsheets.

6. Fishbowl – Manufacturers & QuickBooks Integration

Fishbowl Inventory bridges the gap between manufacturing operations and accounting, making it a go-to for production-heavy businesses. It provides tools for managing raw materials, finished goods, and multi-location warehouses, all while syncing directly with QuickBooks and Xero. 

Whether you’re tracking parts with barcodes, scheduling jobs, or managing assets, Fishbowl keeps everything aligned. Businesses benefit from both cloud and on-premises versions, ensuring flexibility. By combining financials and operations, it removes duplicate work and helps manufacturers get a true picture of costs and profitability.

Specifics	Details
Features	On-premises and cloud inventory options. Real-time tracking across multiple locations. Parts and asset tracking with barcoding support. Seamless integration with QuickBooks and Xero.
Highlights	Ideal for manufacturing and inventory-heavy operations. Combines production visibility with financial sync. Reliable and built for enterprise workflows.

7. Lightspeed Retail – Retailers with Physical Stores

Lightspeed Retail combines POS and inventory management into a single system designed for modern retailers. It enables real-time stock visibility across multiple stores, allowing teams to transfer stock quickly when one location runs low.

The system scales to unlimited outlets and registers, giving retailers a single source of truth whether they sell in-store or online. Built-in performance reports help track which locations or products drive sales. With expert 24/7 support, Lightspeed ensures smooth operations for retailers managing both customers and stock at scale.

Specifics	Details
Features	Unlimited outlets and registers. Real-time cross-location inventory views. Stock transfers between locations. Location-level performance reporting.
Highlights	Built for modern multi-store retailers. Keeps stock consistent everywhere. Expert support keeps operations smooth.

8. Kentro – Multi-Location Management

Kentro is built for businesses juggling multiple sales channels and warehouses, where accuracy and speed are critical. It provides real-time visibility into stock, automatically updates channel pricing, and syncs vendor data without manual uploads. 

The system also automates order fulfillment, ensuring stock gets allocated to the right channel and location every time. With over 100 built-in integrations and thousands more through Zapier, Kentro minimizes repetitive tasks and gives managers confidence that their operations can scale seamlessly without extra headcount.

Specifics	Details
Features	Real-time inventory across all channels. Custom pricing rules per channel. Automatic order fulfillment and channel syncing. Extensive integration library and Zapier support.
Highlights	Perfect for multi-channel, multi-location setups. Minimizes manual syncing. Built for scale with automation at the core.

9. Ordoro – Dropshipping Automation

Ordoro is designed for businesses running dropshipping or mixed fulfillment models, removing the headaches of manual supplier coordination. It automatically routes orders to the right dropship vendors, generates purchase orders, and updates customers with tracking numbers without human input. Its real-time inventory sync across multiple sales channels helps prevent overselling. With additional tools for kitting, shipping label printing, and vendor management, Ordoro consolidates operations into one platform freeing business owners to focus on growth instead of daily order logistics.

Specifics	Details
Features	Auto-order routing to dropship suppliers. Real-time inventory sync across sales channels. SKU bundling and kitting. Automatic purchase order creation and tracking updates.
Highlights	Ideal for dropshipping-heavy businesses. Cuts manual work dramatically. Keeps supplier hand-offs seamless and efficient.

10. QuickBooks Commerce – B2B Wholesale Focus

QuickBooks Commerce simplifies how wholesalers and B2B sellers handle products, orders, and customers. By centralizing the catalog across online stores, marketplaces, and manual sales, it prevents confusion and duplication. It also connects directly with QuickBooks Online, ensuring sales data and accounting remain perfectly aligned. The system supports multiple warehouses, advanced pricing for different customer groups, and detailed reporting. For wholesale businesses that want tight control over both finances and operations, QuickBooks Commerce is a proven solution for sustainable scaling.

Specifics	Details
Features	Centralized product catalog across channels. Real-time order and inventory tracking. Syncs sales and stock with accounting workflows. Support for multiple warehouses and BI reporting.
Highlights	Built for B2B and wholesale operations. Keeps stock and accounting in lockstep. Scalable as your inventory footprint grows.

11. Cin7 – Growing Businesses with POS Integration

Cin7 brings together inventory, POS, order management, and supply chain workflows in one cloud-based platform. It’s especially useful for fast-growing brands that sell both online and offline, with features like batch and serial tracking, B2B ordering portals, and demand forecasting. Cin7 connects seamlessly to finance software, 3PLs, and eCommerce platforms, ensuring data stays in sync without manual updates. Uniting sales, stock, and production data, it helps businesses expand to new channels and markets without losing control of their operations.

Specifics	Details
Features	Cloud-based real-time inventory on all channels. Demand forecasting and batch/serial traceability. Integrated POS and B2B reorder portals. API connections with eCommerce, 3PL, and accounting tools.
Highlights	Designed for scale and omnichannel complexity. Reduces manual routing and stock errors. Seamlessly spans sales, retail, and finance systems.

12. Shopify POS – Best for Shopify Users

Shopify POS offers the simplest way for Shopify merchants to unify their online and offline inventory. The system automatically syncs sales made in-store with your online catalog, so stock levels stay accurate everywhere. Merchants can use existing Shopify features like reporting, discounts, and customer profiles directly in their POS, making it an effortless extension of their store. For retailers already using Shopify, it requires no extra integrations or complex setup, making it a natural choice to keep customers happy both in-person and online.

Specifics	Details
Features	Integrated inventory across online and POS systems. Instant synchronization of stock levels. Deep integration within the Shopify ecosystem.
Highlights	Easiest for Shopify-first merchants. Eliminates cross-platform mismatch. Minimal setup for unified selling.

13. Katana – Manufacturers with Production Tracking

Katana is built specifically for manufacturers who need to track materials, production processes, and inventory side by side. It helps align raw material availability with sales orders, so production schedules run smoothly. 

Its real-time inventory updates keep teams aware of what’s being made and what’s available to sell, while automation rules speed up purchasing and order routing. Katanamrp also integrates with accounting and eCommerce tools, giving manufacturers a clear end-to-end view of operations from supply chain to final customer delivery.

Specifics	Details
Features	Real-time inventory tied to production. Automated purchasing and order routing. Material and batch tracking. Integrations with eCommerce and accounting systems.
Highlights	Designed for modern manufacturers. Keeps production and sales aligned. Improves visibility across supply chain and customers.

14. Linnworks’s SkuVault – Warehouse Management Focus

SkuVault focuses on solving warehouse chaos with advanced WMS capabilities tailored for eCommerce. It tracks inventory at the bin level, supports barcode scanning, and provides real-time visibility into stock across multiple warehouses. Integrating with marketplaces and shopping carts helps prevent overselling and improves fulfillment accuracy. Its reporting tools highlight bottlenecks in warehouse workflows, enabling better planning and smoother operations. For businesses scaling with complex warehousing needs, SkuVault delivers the accuracy and efficiency needed to keep customers satisfied.

Specifics	Details
Features	Bin-level and warehouse-wide inventory tracking. Barcode scanning for fast and accurate counts. Marketplace and shopping cart integrations. Reporting on warehouse performance.
Highlights	Focused on warehouse accuracy and speed. Prevents overselling with strong integrations. Improves fulfillment efficiency and planning.

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Comparing eCommerce Inventory Management Software

Feature Comparison of eCommerce Inventory Management Software

Case Study 1: 2Bhip’s Shift to Automation

Case Study 2: How The Lip Bar Streamlined Operations for Growth with Cin7

In-House vs. Outsourced Inventory Management: Which is Better?

Managing inventory in-house gives you control, but it comes with challenges hiring staff, software, and accuracy across multiple channels. For smaller businesses or those scaling fast, this can get overwhelming. That’s where outsourced inventory management comes in. 

By partnering with specialists like Invensis, businesses get access to advanced systems, expert teams, and proven processes without the heavy investment of building everything in-house. 

Invensis provides inventory management outsourcing that improves accuracy, reduces carrying costs, and keeps your supply chain running smoothly. 

This is especially useful for businesses expanding into new markets or struggling with multi-channel complexity.

Conclusion

Now that you know the top eCommerce inventory management software options for 2025, you’re in a strong position to choose the best one for your business. The important thing is to always align your choice with your specific needs, whether that’s simplicity for a small team, robust forecasting for wholesale, or advanced integrations for multi-channel growth. The right tool should feel like a natural extension of your operations, not another headache. 

And remember, when it comes to taking inventory management to the next level, outsourcing can be a smarter path. Partnering with experts like Invensis gives you access to advanced systems and professional support without the burden of managing everything in-house.

Ready to streamline your inventory management and scale with confidence?

Get in touch with Invensis today and let the experts handle the complexity while you focus on growth.

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